finbif: Interface for the 'Finnish Biodiversity Information Facility' API

A programmatic interface to the 'Finnish Biodiversity Information Facility' ('FinBIF') API (https://api.laji.fi). 'FinBIF' aggregates Finnish biodiversity data from multiple sources in a single open access portal for researchers, citizen scientists, industry and government. 'FinBIF' allows users of biodiversity information to find, access, combine and visualise data on Finnish plants, animals and microorganisms. The 'finbif' package makes the publicly available data in 'FinBIF' easily accessible to programmers. Biodiversity information is available on taxonomy and taxon occurrence. Occurrence data can be filtered by taxon, time, location and other variables. The data accessed are conveniently preformatted for subsequent analyses.

Package options

finbif_api_url

Character. The base url of the API to query. Default: "https://api.laji.fi"

finbif_api_version

Character. The API version to use. Default: "v0"

finbif_allow_query

Logical. Should remote API queries by allowed. Default: TRUE

finbif_use_cache

Logical or Integer. If TRUE or a number greater than zero, then data-caching will be used. If not logical then cache will be invalidated after the number of hours indicated by the value. Default: TRUE

finbif_use_cache_metadata

Logical or Integer. If TRUE or a number greater than zero, then metadata-caching will be used. If not logical then cache will be invalidated after the number of hours indicated by the value. Default: TRUE

finbif_cache_path

Character. The path to the directory where to store cached API queries. If unset (the default) in memory caching is used.

finbif_tz

Character. The timezone used by finbif functions that compute dates and times. Default: Sys.timezone()

finbif_locale

Character. One of the supported two-letter ISO 639-1 language codes. Current supported languages are English, Finnish and Swedish. By default, the system settings are used to set this option if they are set to one of the supported languages, otherwise English is used.

finbif_hide_progress

Logical. Global option to suppress progress indicators for downloading, importing and processing FinBIF records. Default: FALSE

See also

Useful links:

• https://github.com/luomus/finbif

• https://finbif-docs-dev.netlify.app/

• Report bugs at https://github.com/luomus/finbif/issues

Author

Maintainer: William K. Morris willi@mmorris.email (ORCID)

Other contributors:

• Finnish Museum of Natural History - Luomus (ROR) [copyright holder]

• Finnish Biodiversity Information Facility (ROR) [copyright holder]